| Package |
SVAlignR |
| Version |
0.2.2 |
| Date |
2022-03-01 |
| Title |
Recovering Structure of Long Molecules from Structural Variation Data |
| Author |
Kevin R. Coombes |
| Maintainer |
Kevin R. Coombes <krc@silicovore.com> |
| Description |
Implements a method to combine multiple levels of multiple sequence alignment to uncover the structure of complex DNA rearrangements. |
| Depends |
R (>= 3.5.0) |
| Imports |
methods, graphics, grDevices, oompaBase, msa, Biostrings, NameNeedle, dendextend, ape, stringr, igraph, Polychrome, colorspace |
| Suggests |
viridisLite, knitr, rmarkdown |
| VignetteBuilder |
knitr |
| License |
Apache License (== 2.0) |
| URL |
http://oompa.r-forge.r-project.org/ |
| NeedsCompilation |
no |
| Packaged |
2022-07-20 18:14:11 UTC; KRC |
| Built |
R 4.2.1; ; 2022-07-20 18:14:32 UTC; windows |
| User Manual | SVAlignR-manual.pdf |
| R CHECK | 00check.log |
| Vignettes |
SVAlignR.html |
